HL_7QP6_007

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7QP6|1|A|G|385

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QP6_007 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.0796

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7QP6|1|A|G|377
7QP6|1|A|U|378
7QP6|1|A|C|379
7QP6|1|A|G|380
7QP6|1|A|C|381
7QP6|1|A|C|382
7QP6|1|A|G|383
7QP6|1|A|U|384
7QP6|1|A|G|385
7QP6|1|A|C|386
7QP6|1|A|C|387

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain R

40S ribosomal protein S8