HL_7QP6_036

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

7QP6|1|A|G|1849

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QP6_036 not in the Motif Atlas

Geometric match to HL_4V88_222

Geometric discrepancy: 0.1624

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QP6|1|A|G|1847
7QP6|1|A|U|1848
7QP6|1|A|G|1849
7QP6|1|A|MA6|1850
7QP6|1|A|MA6|1851
7QP6|1|A|C|1852

Current chains

Chain A

18S rRNA

Nearby chains

Chain 9

60S ribosomal protein L41

Chain p

Eukaryotic translation initiation factor 1