HL_7QP6_038
3D structure
- PDB id
- 7QP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 48S initiation complex in open state (h48S AUG open)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QP6_038 not in the Motif Atlas
- Geometric match to HL_5T83_002
- Geometric discrepancy: 0.2717
- The information below is about HL_5T83_002
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Guanidine riboswitch aptamer P2 hairpin
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
7QP6|1|w|G|30
7QP6|1|w|C|31
7QP6|1|w|C|32
7QP6|1|w|C|33
7QP6|1|w|A|34
7QP6|1|w|U|35
7QP6|1|w|A|36
7QP6|1|w|A|37
7QP6|1|w|C|38
Current chains
- Chain w
- Initiator Met-tRNA-i
Nearby chains
- Chain 7
- mRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Y
- 40S ribosomal protein S16
- Chain p
- Eukaryotic translation initiation factor 1
- Chain r
- Eukaryotic translation initiation factor 2 subunit 1
- Chain s
- Eukaryotic translation initiation factor 2 subunit 2
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