HL_7QVP_010

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCAGGGAGAG

Length

11 nucleotides

Bulged bases

7QVP|1|D5|G|18, 7QVP|1|D5|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_010 not in the Motif Atlas

Homologous match to HL_7KJT_001

Geometric discrepancy: 0.5261

The information below is about HL_7KJT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68572.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7QVP|1|D5|C|11
7QVP|1|D5|U|12
7QVP|1|D5|C|13
7QVP|1|D5|A|14
7QVP|1|D5|G|15
7QVP|1|D5|G|18
7QVP|1|D5|G|19
7QVP|1|D5|A|21
7QVP|1|D5|G|22
7QVP|1|D5|A|23
7QVP|1|D5|G|24

Current chains

Chain D5

tRNA P/P

Nearby chains

Chain L6

Large subunit ribosomal RNA; LSU rRNA

Chain MJ

60S ribosomal protein L11