HL_7QVP_011
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QVP_011 not in the Motif Atlas
- Homologous match to HL_4V7M_033
- Geometric discrepancy: 0.4248
- The information below is about HL_4V7M_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QVP|1|D5|G|30
7QVP|1|D5|A|31
7QVP|1|D5|U|32
7QVP|1|D5|U|33
7QVP|1|D5|G|34
7QVP|1|D5|A|35
7QVP|1|D5|A|36
7QVP|1|D5|A|37
7QVP|1|D5|A|38
7QVP|1|D5|U|39
7QVP|1|D5|C|40
Current chains
- Chain D5
- tRNA P/P
Nearby chains
- Chain A5
- mRNA
- Chain L6
- Large subunit ribosomal RNA; LSU rRNA
- Chain RP
- 40S ribosomal protein S15
- Chain RX
- 40S ribosomal protein S23
- Chain Re
- 40S ribosomal protein S30
- Chain S3
- Small subunit ribosomal RNA; SSU rRNA
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