HL_7QVP_013
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QVP_013 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.1863
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
7QVP|1|L1|C|47
7QVP|1|L1|A|48
7QVP|1|L1|G|49
7QVP|1|L1|C|50
7QVP|1|L1|U|51
7QVP|1|L1|A|52
7QVP|1|L1|G|53
7QVP|1|L1|C|54
7QVP|1|L1|U|55
7QVP|1|L1|G|56
Current chains
- Chain L1
- 5.8S ribosomal RNA
Nearby chains
- Chain L6
- Large subunit ribosomal RNA; LSU rRNA
- Chain MX
- 60S ribosomal protein L23a
- Chain Mh
- 60S ribosomal protein L35
- Chain Mj
- Ribosomal protein L37
- Chain Ml
- 60S ribosomal protein L39
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