HL_7QVP_014
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 7QVP|1|L1|A|82, 7QVP|1|L1|U|85
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QVP_014 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5461
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7QVP|1|L1|G|68
7QVP|1|L1|U|69
7QVP|1|L1|G|70
7QVP|1|L1|A|71
7QVP|1|L1|A|72
7QVP|1|L1|U|73
7QVP|1|L1|U|74
7QVP|1|L1|G|75
7QVP|1|L1|C|76
7QVP|1|L1|A|77
7QVP|1|L1|G|78
7QVP|1|L1|G|79
7QVP|1|L1|A|80
7QVP|1|L1|C|81
7QVP|1|L1|A|82
7QVP|1|L1|C|83
7QVP|1|L1|A|84
7QVP|1|L1|U|85
7QVP|1|L1|U|86
7QVP|1|L1|G|87
7QVP|1|L1|A|88
7QVP|1|L1|U|89
7QVP|1|L1|C|90
Current chains
- Chain L1
- 5.8S ribosomal RNA
Nearby chains
- Chain L6
- Large subunit ribosomal RNA; LSU rRNA
- Chain MY
- KOW domain-containing protein
- Chain Mh
- 60S ribosomal protein L35
- Chain Mj
- Ribosomal protein L37
- Chain Ml
- 60S ribosomal protein L39
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