HL_7QVP_015

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

7QVP|1|L1|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_015 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3272

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

7QVP|1|L1|C|107
7QVP|1|L1|A|108
7QVP|1|L1|C|109
7QVP|1|L1|U|110
7QVP|1|L1|U|111
7QVP|1|L1|G|112

Current chains

Chain L1

5.8S ribosomal RNA

Nearby chains

Chain L6

Large subunit ribosomal RNA; LSU rRNA

Chain MX

60S ribosomal protein L23a

Chain Mj

Ribosomal protein L37

Chain Ml

60S ribosomal protein L39