HL_7QVP_016

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCCUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_016 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.3308

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7QVP|1|L1|G|122
7QVP|1|L1|U|123
7QVP|1|L1|U|124
7QVP|1|L1|C|125
7QVP|1|L1|C|126
7QVP|1|L1|U|127
7QVP|1|L1|C|128

Current chains

Chain L1

5.8S ribosomal RNA

Nearby chains

Chain L6

Large subunit ribosomal RNA; LSU rRNA