HL_7QVP_037

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_037 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2919

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7QVP|1|L5|C|1436
7QVP|1|L5|C|1437
7QVP|1|L5|U|1438
7QVP|1|L5|C|1439
7QVP|1|L5|U|1440
7QVP|1|L5|C|1441
7QVP|1|L5|C|1442
7QVP|1|L5|A|1443
7QVP|1|L5|G|1444
7QVP|1|L5|U|1445
7QVP|1|L5|C|1446
7QVP|1|L5|C|1447
7QVP|1|L5|G|1448

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7