HL_7QVP_055

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_055 not in the Motif Atlas

Geometric match to HL_6CB3_004

Geometric discrepancy: 0.1903

The information below is about HL_6CB3_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7QVP|1|L5|C|2561
7QVP|1|L5|G|2562
7QVP|1|L5|C|2563
7QVP|1|L5|G|2564
7QVP|1|L5|A|2565
7QVP|1|L5|G|2566

Current chains

Chain L5

28S ribosomal RNA

Nearby chains