HL_7QVP_096

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7QVP|1|L6|G|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_096 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.528

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

7QVP|1|L6|C|131
7QVP|1|L6|G|132
7QVP|1|L6|C|133
7QVP|1|L6|G|134
7QVP|1|L6|G|135
7QVP|1|L6|C|136
7QVP|1|L6|G|137

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MN

60S ribosomal protein L15

Chain Mh

60S ribosomal protein L35

Chain Mj

Ribosomal protein L37