HL_7QVP_098

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

7QVP|1|L6|U|224, 7QVP|1|L6|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_098 not in the Motif Atlas

Homologous match to HL_8C3A_006

Geometric discrepancy: 0.1182

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7QVP|1|L6|C|222
7QVP|1|L6|G|223
7QVP|1|L6|U|224
7QVP|1|L6|G|225
7QVP|1|L6|G|226

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MC

60S ribosomal protein L4

Chain MY

KOW domain-containing protein