HL_7QVP_099

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

7QVP|1|L6|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_099 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.1483

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7QVP|1|L6|G|230
7QVP|1|L6|U|231
7QVP|1|L6|G|232
7QVP|1|L6|U|233
7QVP|1|L6|G|234
7QVP|1|L6|A|235
7QVP|1|L6|G|236
7QVP|1|L6|G|237
7QVP|1|L6|C|238

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain MC

60S ribosomal protein L4

Chain MY

KOW domain-containing protein