HL_7QVP_106

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCCCGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_106 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3795

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

7QVP|1|L6|C|988
7QVP|1|L6|U|989
7QVP|1|L6|C|990
7QVP|1|L6|C|991
7QVP|1|L6|C|992
7QVP|1|L6|G|1064
7QVP|1|L6|G|1065

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain ME

60S ribosomal protein L6