HL_7QVP_109

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7QVP|1|L6|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_109 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0949

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7QVP|1|L6|U|1317
7QVP|1|L6|C|1318
7QVP|1|L6|U|1319
7QVP|1|L6|U|1320
7QVP|1|L6|G|1321
7QVP|1|L6|A|1322
7QVP|1|L6|A|1323
7QVP|1|L6|A|1324
7QVP|1|L6|C|1325
7QVP|1|L6|A|1326

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MB

60S ribosomal protein L3

Chain Ma

60S ribosomal protein L27a

Chain Me

60S ribosomal protein L32