HL_7QVP_115

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_115 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.1306

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QVP|1|L6|G|1561
7QVP|1|L6|G|1562
7QVP|1|L6|A|1563
7QVP|1|L6|A|1564
7QVP|1|L6|A|1565
7QVP|1|L6|C|1566

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain RN

40S ribosomal protein S13

Chain S3

Small subunit ribosomal RNA; SSU rRNA