HL_7QVP_122

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

7QVP|1|L6|A|1891, 7QVP|1|L6|A|1892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_122 not in the Motif Atlas

Homologous match to HL_8C3A_026

Geometric discrepancy: 0.0863

The information below is about HL_8C3A_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7QVP|1|L6|G|1886
7QVP|1|L6|G|1887
7QVP|1|L6|A|1888
7QVP|1|L6|U|1889
7QVP|1|L6|G|1890
7QVP|1|L6|A|1891
7QVP|1|L6|A|1892
7QVP|1|L6|C|1893

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain L9

5S ribosomal RNA; 5S rRNA

Chain MF

60S ribosomal protein L7

Chain Me

60S ribosomal protein L32

Chain Mf

60S ribosomal protein L35a