HL_7QVP_127

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7QVP|1|L6|G|2421, 7QVP|1|L6|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_127 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.2005

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7QVP|1|L6|A|2420
7QVP|1|L6|G|2421
7QVP|1|L6|C|2422
7QVP|1|L6|A|2423
7QVP|1|L6|G|2424
7QVP|1|L6|U|2425
7QVP|1|L6|U|2426

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MP

60S ribosomal protein L17

Chain MR

60S ribosomal protein L19

Chain Ml

60S ribosomal protein L39