HL_7QVP_163

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_163 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.175

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7QVP|1|L6|U|4646
7QVP|1|L6|G|4647
7QVP|1|L6|A|4648
7QVP|1|L6|G|4649
7QVP|1|L6|G|4650
7QVP|1|L6|A|4651

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MR

60S ribosomal protein L19

Chain MU

60S ribosomal protein L22

Chain Md

60S ribosomal protein L31