HL_7QVP_178

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

7QVP|1|S2|U|76

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_178 not in the Motif Atlas

Geometric match to HL_7A0S_007

Geometric discrepancy: 0.3902

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

7QVP|1|S2|C|69
7QVP|1|S2|G|70
7QVP|1|S2|G|71
7QVP|1|S2|C|72
7QVP|1|S2|C|73
7QVP|1|S2|G|74
7QVP|1|S2|G|75
7QVP|1|S2|U|76
7QVP|1|S2|A|77
7QVP|1|S2|C|78
7QVP|1|S2|A|79
7QVP|1|S2|G|80

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6