HL_7QVP_213

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7QVP|1|S3|U|160, 7QVP|1|S3|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_213 not in the Motif Atlas

Geometric match to HL_4V9F_046

Geometric discrepancy: 0.2669

The information below is about HL_4V9F_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.5

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

7QVP|1|S3|G|156
7QVP|1|S3|U|157
7QVP|1|S3|A|158
7QVP|1|S3|A|159
7QVP|1|S3|U|160
7QVP|1|S3|U|161
7QVP|1|S3|C|162

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RG

40S ribosomal protein S6

Chain RY

40S ribosomal protein S24