HL_7QVP_217

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7QVP|1|S3|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_217 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.2339

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7QVP|1|S3|G|377
7QVP|1|S3|U|378
7QVP|1|S3|C|379
7QVP|1|S3|G|380
7QVP|1|S3|C|381
7QVP|1|S3|C|382
7QVP|1|S3|G|383
7QVP|1|S3|U|384
7QVP|1|S3|G|385
7QVP|1|S3|C|386
7QVP|1|S3|C|387

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RI

40S ribosomal protein S8

Chain RL

40S ribosomal protein S11