HL_7QVP_218
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QVP_218 not in the Motif Atlas
- Geometric match to HL_4V88_194
- Geometric discrepancy: 0.1803
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7QVP|1|S3|U|416
7QVP|1|S3|C|417
7QVP|1|S3|A|418
7QVP|1|S3|G|419
7QVP|1|S3|G|420
7QVP|1|S3|G|421
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain RC
- 40S ribosomal protein S2
- Chain RJ
- 40S ribosomal protein S9
- Chain RL
- 40S ribosomal protein S11
- Chain RW
- 40S ribosomal protein S15a
- Chain RX
- 40S ribosomal protein S23
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