HL_7QVP_224

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_224 not in the Motif Atlas

Geometric match to HL_4V88_200

Geometric discrepancy: 0.1342

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QVP|1|S3|C|618
7QVP|1|S3|A|619
7QVP|1|S3|G|620
7QVP|1|S3|C|621
7QVP|1|S3|C|622
7QVP|1|S3|G|623

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain A5

mRNA

Chain RX

40S ribosomal protein S23