HL_7QVP_239

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCGCG

Length

6 nucleotides

Bulged bases

7QVP|1|S3|C|1423

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_239 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2361

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7QVP|1|S3|C|1416
7QVP|1|S3|C|1417
7QVP|1|S3|C|1418
7QVP|1|S3|G|1422
7QVP|1|S3|C|1423
7QVP|1|S3|G|1424

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RQ

40S ribosomal protein S16

Chain RT

40S ribosomal protein S19