HL_7QWR_007

3D structure

PDB id

7QWR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

7QWR|1|5|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QWR_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.2095

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7QWR|1|5|G|230
7QWR|1|5|U|231
7QWR|1|5|G|232
7QWR|1|5|U|233
7QWR|1|5|G|234
7QWR|1|5|A|235
7QWR|1|5|G|236
7QWR|1|5|G|237
7QWR|1|5|C|238

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4

Chain Y

Ribosomal protein L26