HL_7QWR_020

3D structure

PDB id

7QWR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

7QWR|1|5|C|1481, 7QWR|1|5|G|1482, 7QWR|1|5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QWR_020 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.304

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

7QWR|1|5|G|1479
7QWR|1|5|C|1480
7QWR|1|5|C|1481
7QWR|1|5|G|1482
7QWR|1|5|C|1483
7QWR|1|5|G|1484
7QWR|1|5|C|1485
7QWR|1|5|C|1486

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

L13

Chain i

60S ribosomal protein L36