HL_7QWR_077

3D structure

PDB id

7QWR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

7QWR|1|8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QWR_077 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1601

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7QWR|1|8|G|121
7QWR|1|8|G|122
7QWR|1|8|U|123
7QWR|1|8|U|124
7QWR|1|8|C|125
7QWR|1|8|C|126
7QWR|1|8|U|127
7QWR|1|8|C|128
7QWR|1|8|C|129

Current chains

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

Ribosomal_L23eN domain-containing protein