HL_7R4X_023

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7R4X|1|2|U|1300, 7R4X|1|2|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7R4X_023 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2216

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7R4X|1|2|A|1295
7R4X|1|2|U|1296
7R4X|1|2|U|1297
7R4X|1|2|G|1298
7R4X|1|2|A|1299
7R4X|1|2|U|1300
7R4X|1|2|A|1301
7R4X|1|2|G|1302
7R4X|1|2|C|1303
7R4X|1|2|U|1304

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a