HL_7R7A_017

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AUGAAAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7R7A_017 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.3885

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7R7A|1|1|A|706
7R7A|1|1|U|707
7R7A|1|1|G|708
7R7A|1|1|A|709
7R7A|1|1|A|710
7R7A|1|1|A|711
7R7A|1|1|G|712
7R7A|1|1|U|713

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

Ribosome biogenesis protein BRX1

Chain J

rRNA-processing protein EBP2