HL_7RQ9_065

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7RQ9|1|1A|G|2751, 7RQ9|1|1A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQ9_065 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0545

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

7RQ9|1|1A|C|2745
7RQ9|1|1A|U|2746
7RQ9|1|1A|G|2747
7RQ9|1|1A|A|2748
7RQ9|1|1A|A|2749
7RQ9|1|1A|A|2750
7RQ9|1|1A|G|2751
7RQ9|1|1A|C|2752
7RQ9|1|1A|A|2753
7RQ9|1|1A|U|2754
7RQ9|1|1A|C|2755
7RQ9|1|1A|U|2756
7RQ9|1|1A|A|2757
7RQ9|1|1A|A|2758
7RQ9|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6