HL_7RQA_170

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7RQA|1|2A|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQA_170 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0644

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

7RQA|1|2A|C|2745
7RQA|1|2A|U|2746
7RQA|1|2A|G|2747
7RQA|1|2A|A|2748
7RQA|1|2A|A|2749
7RQA|1|2A|A|2750
7RQA|1|2A|G|2751
7RQA|1|2A|C|2752
7RQA|1|2A|A|2753
7RQA|1|2A|U|2754
7RQA|1|2A|C|2755
7RQA|1|2A|U|2756
7RQA|1|2A|A|2757
7RQA|1|2A|A|2758
7RQA|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13