HL_7RQC_168

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7RQC|1|2A|G|2751, 7RQC|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQC_168 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0797

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

7RQC|1|2A|C|2745
7RQC|1|2A|U|2746
7RQC|1|2A|G|2747
7RQC|1|2A|A|2748
7RQC|1|2A|A|2749
7RQC|1|2A|A|2750
7RQC|1|2A|G|2751
7RQC|1|2A|C|2752
7RQC|1|2A|A|2753
7RQC|1|2A|U|2754
7RQC|1|2A|C|2755
7RQC|1|2A|U|2756
7RQC|1|2A|A|2757
7RQC|1|2A|A|2758
7RQC|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13