HL_7RQE_086
3D structure
- PDB id
- 7RQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7RQE_086 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.0677
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
7RQE|1|1a|C|689
7RQE|1|1a|G|690
7RQE|1|1a|G|691
7RQE|1|1a|U|692
7RQE|1|1a|G|693
7RQE|1|1a|A|694
7RQE|1|1a|A|695
7RQE|1|1a|A|696
7RQE|1|1a|U|697
7RQE|1|1a|G|698
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1g
- 30S ribosomal protein S7
- Chain 1k
- 30S ribosomal protein S11
- Chain 1y
- Ribosome-associated inhibitor A
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