HL_7RR5_023

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7RR5|1|C1|U|879, 7RR5|1|C1|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_023 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1052

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7RR5|1|C1|A|876
7RR5|1|C1|C|877
7RR5|1|C1|G|878
7RR5|1|C1|U|879
7RR5|1|C1|G|880
7RR5|1|C1|C|881
7RR5|1|C1|A|882
7RR5|1|C1|A|883
7RR5|1|C1|A|884
7RR5|1|C1|U|885

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

RPL3 isoform 1

Chain LP

60S ribosomal protein L17-A

Chain Lj

Ribosomal protein L37