3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
GCGAAAGAC
Length
9 nucleotides
Bulged bases
7RR5|1|C1|A|913, 7RR5|1|C1|G|916
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7RR5_024 not in the Motif Atlas
Homologous match to HL_8C3A_021
Geometric discrepancy: 0.106
The information below is about HL_8C3A_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56443.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

7RR5|1|C1|G|910
7RR5|1|C1|C|911
7RR5|1|C1|G|912
7RR5|1|C1|A|913
7RR5|1|C1|A|914
7RR5|1|C1|A|915
7RR5|1|C1|G|916
7RR5|1|C1|A|917
7RR5|1|C1|C|918

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LA
60S ribosomal protein L2-B
Chain LN
60S ribosomal protein L15-A
Chain Lj
Ribosomal protein L37

Coloring options:


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