HL_7RR5_024

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7RR5|1|C1|A|913, 7RR5|1|C1|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_024 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.106

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7RR5|1|C1|G|910
7RR5|1|C1|C|911
7RR5|1|C1|G|912
7RR5|1|C1|A|913
7RR5|1|C1|A|914
7RR5|1|C1|A|915
7RR5|1|C1|G|916
7RR5|1|C1|A|917
7RR5|1|C1|C|918

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-B

Chain LN

60S ribosomal protein L15-A

Chain Lj

Ribosomal protein L37