HL_7RR5_030

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7RR5|1|C1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_030 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.338

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01876.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

7RR5|1|C1|C|1239
7RR5|1|C1|A|1240
7RR5|1|C1|U|1241
7RR5|1|C1|G|1242
7RR5|1|C1|G|1243
7RR5|1|C1|A|1244
7RR5|1|C1|A|1245
7RR5|1|C1|G|1246
7RR5|1|C1|U|1247
7RR5|1|C1|C|1248
7RR5|1|C1|G|1249

Current chains

Chain C1

25S rRNA

Nearby chains

Chain P2

RPL12A isoform 1

Chain R

Ribosome-interacting GTPase 1