HL_7RR5_044

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

7RR5|1|C1|C|1846, 7RR5|1|C1|G|1848, 7RR5|1|C1|A|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_044 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.0907

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28421.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7RR5|1|C1|C|1844
7RR5|1|C1|G|1845
7RR5|1|C1|C|1846
7RR5|1|C1|A|1847
7RR5|1|C1|G|1848
7RR5|1|C1|C|1849
7RR5|1|C1|A|1850
7RR5|1|C1|G|1851

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LC

RPL4A isoform 1

Chain LP

60S ribosomal protein L17-A

Chain Lj

Ribosomal protein L37

Chain Ll

60S ribosomal protein L39