HL_7RR5_053

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7RR5|1|C1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_053 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1019

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.2

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

7RR5|1|C1|U|2292
7RR5|1|C1|C|2293
7RR5|1|C1|U|2294
7RR5|1|C1|A|2295
7RR5|1|C1|A|2296
7RR5|1|C1|U|2297
7RR5|1|C1|U|2298
7RR5|1|C1|A|2299
7RR5|1|C1|G|2300

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LV

60S ribosomal protein L23-B