HL_7RR5_066

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7RR5|1|C1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_066 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.0943

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7RR5|1|C1|A|2897
7RR5|1|C1|G|2898
7RR5|1|C1|C|2899
7RR5|1|C1|A|2900
7RR5|1|C1|G|2901
7RR5|1|C1|A|2902
7RR5|1|C1|A|2903
7RR5|1|C1|U|2904

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9-A

Chain Lm

Ubiquitin-60S ribosomal protein L40

Chain R

Ribosome-interacting GTPase 1