HL_7RR5_081

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

7RR5|1|C2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_081 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1172

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7RR5|1|C2|G|243
7RR5|1|C2|A|244
7RR5|1|C2|U|245
7RR5|1|C2|G|246
7RR5|1|C2|A|247
7RR5|1|C2|U|248
7RR5|1|C2|U|249
7RR5|1|C2|C|250

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SL

40S ribosomal protein S11-B