HL_7RR5_083

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7RR5|1|C2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_083 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1496

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7RR5|1|C2|G|330
7RR5|1|C2|A|331
7RR5|1|C2|U|332
7RR5|1|C2|A|333
7RR5|1|C2|G|334
7RR5|1|C2|U|335
7RR5|1|C2|G|336
7RR5|1|C2|G|337
7RR5|1|C2|C|338

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SI

RPS8A isoform 1

Chain SL

40S ribosomal protein S11-B