HL_7RR5_103

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

7RR5|1|C2|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_103 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.1917

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7RR5|1|C2|A|1238
7RR5|1|C2|U|1239
7RR5|1|C2|U|1240
7RR5|1|C2|G|1241
7RR5|1|C2|A|1242
7RR5|1|C2|G|1243
7RR5|1|C2|A|1244
7RR5|1|C2|G|1245
7RR5|1|C2|C|1246
7RR5|1|C2|U|1247

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SP

RPS15 isoform 1

Chain Sd

RPS29A isoform 1

Chain Sf

Ubiquitin-40S ribosomal protein S31