HL_7S0S_011

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

7S0S|1|C|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S0S_011 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1373

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7S0S|1|C|U|387
7S0S|1|C|U|388
7S0S|1|C|G|389
7S0S|1|C|G|390
7S0S|1|C|G|391
7S0S|1|C|A|392
7S0S|1|C|U|393
7S0S|1|C|G|394

Current chains

Chain C

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L24