HL_7S0S_050

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S0S_050 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.1025

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7S0S|1|C|C|2023
7S0S|1|C|G|2024
7S0S|1|C|C|2025
7S0S|1|C|A|2026
7S0S|1|C|A|2027
7S0S|1|C|G|2028

Current chains

Chain C

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain Z

50S ribosomal protein L28