HL_7S1H_006

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7S1H|1|C|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1H_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0785

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7S1H|1|C|G|259
7S1H|1|C|G|260
7S1H|1|C|U|261
7S1H|1|C|A|262
7S1H|1|C|A|263
7S1H|1|C|C|264
7S1H|1|C|G|265
7S1H|1|C|G|266
7S1H|1|C|C|267

Current chains

Chain C

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S20

Chain y

30S ribosomal protein S17