HL_7S1H_043

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

7S1H|1|I|G|329, 7S1H|1|I|A|330, 7S1H|1|I|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1H_043 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0679

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7S1H|1|I|G|327
7S1H|1|I|U|328
7S1H|1|I|G|329
7S1H|1|I|A|330
7S1H|1|I|C|331
7S1H|1|I|A|332
7S1H|1|I|G|333
7S1H|1|I|C|334
7S1H|1|I|C|335

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

50S ribosomal protein L24