3D structure

PDB id
7S1H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wild-type Escherichia coli ribosome with antibiotic linezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.35 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
7S1H|1|I|A|1913, 7S1H|1|I|C|1914
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7S1H_080 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.292
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

7S1H|1|I|G|1910
7S1H|1|I|PSU|1911
7S1H|1|I|A|1912
7S1H|1|I|A|1913
7S1H|1|I|C|1914
7S1H|1|I|3TD|1915
7S1H|1|I|A|1916
7S1H|1|I|PSU|1917
7S1H|1|I|A|1918
7S1H|1|I|A|1919
7S1H|1|I|C|1920

Current chains

Chain I
23S rRNA

Nearby chains

Chain C
Small subunit ribosomal RNA; SSU rRNA
Chain t
30S ribosomal protein S12

Coloring options:


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