HL_7S1H_086

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7S1H|1|I|A|2268, 7S1H|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1H_086 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0691

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7S1H|1|I|C|2264
7S1H|1|I|U|2265
7S1H|1|I|A|2266
7S1H|1|I|A|2267
7S1H|1|I|A|2268
7S1H|1|I|G|2269
7S1H|1|I|A|2270
7S1H|1|I|G|2271
7S1H|1|I|U|2272
7S1H|1|I|A|2273
7S1H|1|I|A|2274
7S1H|1|I|C|2275
7S1H|1|I|G|2276

Current chains

Chain I

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain e

50S ribosomal protein L27